STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM05087.1PFAM: Protein of unknown function (DUF2911). (304 aa)    
Predicted Functional Partners:
AFM06306.1
Putative LmbE-like protein; PFAM: GlcNAc-PI de-N-acetylase.
  
     0.761
AFM05250.1
PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.748
bshC
Bacillithiol biosynthesis cysteine-adding enzyme BshC; PFAM: Uncharacterized protein conserved in bacteria (DUF2317); TIGRFAM: bacillithiol biosynthesis cysteine-adding enzyme BshC; Belongs to the BshC family.
  
     0.627
AFM06025.1
PFAM: Glycosyl transferases group 1; TIGRFAM: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA.
  
    0.548
AFM06377.1
PFAM: Protein of unknown function (DUF1094); Belongs to the UPF0403 family.
  
     0.540
AFM05709.1
PFAM: Protein of unknown function (DUF2480).
  
     0.537
AFM05089.1
Hypothetical protein.
  
     0.497
AFM05088.1
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; PFAM: AMP-binding enzyme.
       0.451
AFM03337.1
Protein of unknown function (DUF664).
  
     0.449
AFM06203.1
Hypothetical protein.
  
     0.441
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.