STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM05309.1Hypothetical protein. (329 aa)    
Predicted Functional Partners:
AFM05310.1
Hypothetical protein.
  
    0.747
AFM05815.1
Hypothetical protein.
  
     0.704
AFM04643.1
Hypothetical protein.
  
     0.663
AFM05355.1
Hypothetical protein; PFAM: HNH endonuclease.
  
     0.650
AFM02977.1
Hypothetical protein.
  
     0.637
AFM05816.1
Hypothetical protein.
  
     0.636
AFM02976.1
Hypothetical protein.
  
    0.616
AFM05354.1
Hypothetical protein.
  
     0.609
AFM04644.1
Hypothetical protein.
  
     0.598
AFM05814.1
PFAM: Reverse transcriptase (RNA-dependent DNA polymerase).
  
     0.592
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.