STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM05468.1T5orf172 domain-containing protein; PFAM: T5orf172 domain. (396 aa)    
Predicted Functional Partners:
AFM05467.1
DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain.
  
 0.971
AFM02672.1
PFAM: Type I restriction modification DNA specificity domain.
  
  
 0.730
AFM02671.1
Type I restriction-modification system methyltransferase subunit; PFAM: N-6 DNA Methylase; HsdM N-terminal domain.
  
 
 0.689
AFM03723.1
Type I restriction-modification system methyltransferase subunit; PFAM: N-6 DNA Methylase; Eco57I restriction endonuclease.
  
 
 0.689
AFM05673.1
Type I restriction-modification system methyltransferase subunit; PFAM: Eco57I restriction endonuclease.
  
 
 0.689
AFM05922.1
Type I restriction-modification system methyltransferase subunit; PFAM: N-6 DNA Methylase.
  
 
 0.689
AFM03659.1
Hypothetical protein.
  
 
 0.672
AFM02852.1
Putative transcriptional regulator with HTH domain; PFAM: Divergent AAA domain.
  
    0.582
AFM05469.1
Hypothetical protein.
       0.427
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.