STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM05528.1Hypothetical protein. (662 aa)    
Predicted Functional Partners:
AFM05527.1
PFAM: Protein of unknown function (DUF1449).
 
     0.867
AFM04985.1
Phage shock protein A (IM30), suppresses sigma54-dependent transcription; PFAM: PspA/IM30 family.
 
  
 0.802
AFM04466.1
Phage shock protein A (IM30), suppresses sigma54-dependent transcription; PFAM: PspA/IM30 family.
 
  
 0.800
AFM04986.1
Hypothetical protein.
 
     0.718
AFM05370.1
Hypothetical protein; TIGRFAM: Por secretion system C-terminal sorting domain.
  
    0.559
AFM05425.1
Hypothetical protein.
  
     0.551
AFM03308.1
PFAM: Eco57I restriction endonuclease.
  
     0.522
AFM05157.1
Hypothetical protein.
  
    0.502
AFM05521.1
Leucine Rich Repeat (LRR)-containing protein; PFAM: Miro-like protein; TIGRFAM: small GTP-binding protein domain.
  
 
 0.495
AFM04990.1
Hypothetical protein; PFAM: yiaA/B two helix domain.
  
     0.488
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.