STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM05586.1Transposase family protein; PFAM: Transposase DDE domain. (362 aa)    
Predicted Functional Partners:
AFM05585.1
Hypothetical protein.
       0.568
AFM04619.1
DnaJ-like protein; PFAM: DnaJ domain.
  
     0.476
AFM05329.1
Transposase family protein; PFAM: Transposase DDE domain.
  
     0.471
AFM05587.1
PFAM: Phosphorylase superfamily.
       0.418
AFM02669.1
Transposase family protein; PFAM: Transposase DDE domain.
  
     0.412
AFM05590.1
Transposase family protein; PFAM: Transposase DDE domain.
 
    
0.402
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.