STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM05941.1ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component; PFAM: ABC transporter. (351 aa)    
Predicted Functional Partners:
AFM05594.1
ABC-type Fe3+-siderophore transport system, permease component; PFAM: FecCD transport family; manually curated; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.998
AFM03053.1
ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein.
 
 
 0.975
AFM04415.1
ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein.
  
 
 0.894
AFM05940.1
Membrane protein TerC, possibly involved in tellurium resistance; PFAM: Integral membrane protein TerC family.
       0.541
AFM03552.1
ABC-type Fe3+ transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
   
  
 0.455
AFM05938.1
Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain.
  
  
 0.434
AFM04689.1
ABC-type Mn2+/Zn2+ transport system, permease component; PFAM: ABC 3 transport family; Iron dependent repressor, metal binding and dimerisation domain.
    
 0.422
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.