STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM05955.1Hypothetical protein. (285 aa)    
Predicted Functional Partners:
AFM05956.1
Putative transcriptional regulator; PFAM: HxlR-like helix-turn-helix.
       0.701
AFM05923.1
PFAM: Predicted membrane protein (DUF2339).
  
     0.642
AFM05708.1
Hypothetical protein.
  
     0.587
AFM06291.1
Conserved repeat protein; TIGRFAM: Por secretion system C-terminal sorting domain; conserved repeat domain.
  
     0.528
AFM03239.1
Putative transcriptional regulator; Belongs to the GbsR family.
  
     0.488
AFM02582.1
PFAM: Phytanoyl-CoA dioxygenase (PhyH).
  
     0.487
AFM05957.1
TIGRFAM: lactoylglutathione lyase family protein.
       0.486
AFM03792.1
Thiol-disulfide isomerase-like thioredoxin; PFAM: AhpC/TSA family.
  
     0.431
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.