STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM06051.1Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family. (752 aa)    
Predicted Functional Partners:
AFM05983.1
Hypothetical protein.
 
 
 
 0.840
AFM05053.1
PFAM: Tetratricopeptide repeat.
 
  
 0.817
AFM03416.1
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: OmpA family.
 
 
 0.816
AFM05280.1
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family; Tetratricopeptide repeat.
 
 
0.811
AFM05683.1
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family.
 
 
0.804
AFM02569.1
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family.
 
 
0.799
AFM05362.1
Hypothetical protein.
  
 
 0.718
AFM05867.1
Hypothetical protein.
  
 
   0.714
AFM02903.1
PFAM: Glycosyl transferases group 1.
  
    0.703
AFM04593.1
Hypothetical protein.
 
  
 0.698
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.