STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM06081.1Transposase family protein; PFAM: Transposase DDE domain. (376 aa)    
Predicted Functional Partners:
AFM04619.1
DnaJ-like protein; PFAM: DnaJ domain.
  
     0.490
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.473
AFM06082.1
PFAM: 7TM diverse intracellular signalling; Stage II sporulation protein E (SpoIIE); Glycosyl hydrolases family 2, sugar binding domain.
       0.442
AFM05329.1
Transposase family protein; PFAM: Transposase DDE domain.
  
     0.427
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.