STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM06386.1PFAM: Protein of unknown function (DUF3109). (198 aa)    
Predicted Functional Partners:
AFM03694.1
PFAM: Protein of unknown function (DUF2795).
  
     0.772
AFM04074.1
Hypothetical protein.
 
     0.765
AFM05517.1
Hypothetical protein.
  
     0.743
AFM04851.1
PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein.
  
     0.686
AFM02910.1
Hypothetical protein.
  
     0.678
AFM05071.1
Hypothetical protein.
  
     0.668
AFM03970.1
Beta-barrel assembly machine subunit BamA; PFAM: Surface antigen variable number repeat; TIGRFAM: outer membrane protein assembly complex, YaeT protein.
  
     0.667
AFM04815.1
Hypothetical protein.
 
     0.662
AFM04510.1
PFAM: RNA polymerase Rpb6.
  
     0.660
AFM06161.1
PFAM: Bacterial membrane protein YfhO.
  
     0.637
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.