STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB07962.1Hypothetical protein; IMG reference gene:2504153582. (64 aa)    
Predicted Functional Partners:
AEB07960.1
COGs: COG4710 DNA-binding protein with an HTH domain; InterPro IPR002145; KEGG: pla:Plav_1616 CopG/DNA-binding domain-containing protein; PFAM: CopG-like DNA-binding; SPTR: CopG domain protein DNA-binding domain protein; IMG reference gene:2504153580; PFAM: Ribbon-helix-helix protein, copG family.
       0.773
AEB07961.1
KEGG: xfm:Xfasm12_1292 toxin-like protein; SPTR: Toxin-like protein; IMG reference gene:2504153581.
       0.773
AEB07959.1
Type III restriction protein res subunit; COGs: COG1061 DNA or RNA helicase of superfamily II; InterPro IPR014001:IPR001650:IPR006935; KEGG: dba:Dbac_1355 type III restriction protein res subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: Putative uncharacterized protein; IMG reference gene:2504153579; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit.
       0.536
AEB07958.1
COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: dvl:Dvul_1364 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; SPTR: Histone family protein DNA-binding protein; IMG reference gene:2504153578; PFAM: Bacterial DNA-binding protein.
       0.495
Your Current Organism:
Desulfobacca acetoxidans
NCBI taxonomy Id: 880072
Other names: D. acetoxidans DSM 11109, Desulfobacca acetoxidans DSM 11109, Desulfobacca acetoxidans str. DSM 11109, Desulfobacca acetoxidans strain DSM 11109
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