STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB08004.1Radical SAM domain protein; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: tne:Tneu_0969 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; IMG reference gene:2504153626; PFAM: Radical SAM superfamily. (337 aa)    
Predicted Functional Partners:
AEB08285.1
COGs: COG1522 Transcriptional regulators; InterPro IPR019888; KEGG: dol:Dole_0464 AsnC family transcriptional regulator; SMART: Transcription regulator AsnC-type; SPTR: Putative transcriptional regulator, AsnC family; IMG reference gene:2504153917.
  
 0.881
AEB10411.1
Putative transcriptional regulator, AsnC family; COGs: COG1522 Transcriptional regulators; KEGG: dat:HRM2_05170 putative HTH-type transcriptional regulator; SPTR: Heme d1 biosynthesis protein; IMG reference gene:2504156155.
 
  
 0.808
AEB09414.1
Radical SAM domain protein; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197:IPR006638; KEGG: ter:Tery_4990 radical SAM family protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM; IMG reference gene:2504155105; PFAM: Radical SAM superfamily.
  
    0.738
AEB08003.1
KEGG: gym:GYMC10_5346 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504153625; PFAM: Coenzyme PQQ synthesis protein D (PqqD).
       0.718
AEB08005.1
Radical SAM domain protein; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: rpd:RPD_4323 radical SAM family protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Putative uncharacterized protein; IMG reference gene:2504153627; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain.
 
    
0.706
AEB08007.1
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: mpi:Mpet_2793 type 12 methyltransferase; PFAM: Methyltransferase type 11; SPTR: Putative uncharacterized protein; IMG reference gene:2504153629; PFAM: Putative methyltransferase; TIGRFAM: methyltransferase, FkbM family.
       0.572
AEB08006.1
Major facilitator superfamily MFS_1; InterPro IPR011701; KEGG: nde:NIDE1691 putative MFS family permease; PFAM: Major facilitator superfamily MFS-1; SPTR: Putative Permease, MFS family; IMG reference gene:2504153628; PFAM: Bacterial protein of unknown function (DUF894).
       0.569
AEB08927.1
Radical SAM domain protein; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR006158:IPR007197; KEGG: nde:NIDE0843 hypothetical protein; PFAM: Radical SAM; Cobalamin (vitamin B12)-binding; SMART: Elongator protein 3/MiaB/NifB; SPTR: Putative uncharacterized protein; IMG reference gene:2504154596; PFAM: Radical SAM superfamily; B12 binding domain.
 
  
 0.431
Your Current Organism:
Desulfobacca acetoxidans
NCBI taxonomy Id: 880072
Other names: D. acetoxidans DSM 11109, Desulfobacca acetoxidans DSM 11109, Desulfobacca acetoxidans str. DSM 11109, Desulfobacca acetoxidans strain DSM 11109
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.