STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB08383.1KEGG: fpl:Ferp_1473 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504154022. (78 aa)    
Predicted Functional Partners:
AEB08382.1
KEGG: ptm:GSPATT00012453001 hypothetical protein; SPTR: Chromosome undetermined scaffold_34, whole genome shotgun sequence; IMG reference gene:2504154021.
       0.788
AEB08384.1
KEGG: fpl:Ferp_1472 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504154023.
       0.695
AEB08385.1
L-carnitine dehydratase/bile acid-inducible protein F; COGs: COG1804 acyl-CoA transferase/carnitine dehydratase; InterPro IPR003673; KEGG: fpl:Ferp_1471 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; SPTR: L-carnitine dehydratase/bile acid-inducible protein F; IMG reference gene:2504154024; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.
       0.661
AEB08386.1
L-carnitine dehydratase/bile acid-inducible protein F; COGs: COG1804 acyl-CoA transferase/carnitine dehydratase; InterPro IPR003673; KEGG: fpl:Ferp_1470 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; SPTR: L-carnitine dehydratase/bile acid-inducible protein F; IMG reference gene:2504154025; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.
       0.661
AEB08381.1
KEGG: fpl:Ferp_1468 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504154020.
       0.594
Your Current Organism:
Desulfobacca acetoxidans
NCBI taxonomy Id: 880072
Other names: D. acetoxidans DSM 11109, Desulfobacca acetoxidans DSM 11109, Desulfobacca acetoxidans str. DSM 11109, Desulfobacca acetoxidans strain DSM 11109
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