STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB08500.1Conserved hypothetical protein CHP02594; InterPro IPR013423; KEGG: hdn:Hden_1124 protein of unknown function DUF847; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02594; IMG reference gene:2504154142; TIGRFAM: TIGR02594 family protein. (182 aa)    
Predicted Functional Partners:
AEB08501.1
Helix-turn-helix domain protein; InterPro IPR001387; KEGG: sml:Smlt1898 putative HTH transcriptional regulator; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; IMG reference gene:2504154143; PFAM: Helix-turn-helix.
       0.430
AEB08502.1
Protein of unknown function DUF955; InterPro IPR010359; KEGG: sez:Sez_0307 transcriptional regulator; PFAM: Protein of unknown function DUF955; SPTR: Transcriptional regulator; IMG reference gene:2504154144; PFAM: Domain of unknown function (DUF955).
       0.430
AEB08496.1
DNA methylase N-4/N-6 domain protein; InterPro IPR002941:IPR013216; KEGG: mhu:Mhun_3051 methyltransferase DNA modification enzyme; PFAM: DNA methylase N-4/N-6; Methyltransferase type 11; SPTR: Methyltransferase DNA modification enzyme; IMG reference gene:2504154137; PFAM: DNA methylase.
  
    0.406
Your Current Organism:
Desulfobacca acetoxidans
NCBI taxonomy Id: 880072
Other names: D. acetoxidans DSM 11109, Desulfobacca acetoxidans DSM 11109, Desulfobacca acetoxidans str. DSM 11109, Desulfobacca acetoxidans strain DSM 11109
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.