STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB08502.1Protein of unknown function DUF955; InterPro IPR010359; KEGG: sez:Sez_0307 transcriptional regulator; PFAM: Protein of unknown function DUF955; SPTR: Transcriptional regulator; IMG reference gene:2504154144; PFAM: Domain of unknown function (DUF955). (211 aa)    
Predicted Functional Partners:
AEB08501.1
Helix-turn-helix domain protein; InterPro IPR001387; KEGG: sml:Smlt1898 putative HTH transcriptional regulator; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; IMG reference gene:2504154143; PFAM: Helix-turn-helix.
  
  
 0.812
AEB08503.1
KEGG: meh:M301_2497 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504154145.
       0.668
AEB08504.1
KEGG: afw:Anae109_1487 response regulator receiver protein; SPTR: Response regulator receiver protein; IMG reference gene:2504154146.
       0.433
AEB08500.1
Conserved hypothetical protein CHP02594; InterPro IPR013423; KEGG: hdn:Hden_1124 protein of unknown function DUF847; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02594; IMG reference gene:2504154142; TIGRFAM: TIGR02594 family protein.
       0.430
cas1-4
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
     
 0.403
Your Current Organism:
Desulfobacca acetoxidans
NCBI taxonomy Id: 880072
Other names: D. acetoxidans DSM 11109, Desulfobacca acetoxidans DSM 11109, Desulfobacca acetoxidans str. DSM 11109, Desulfobacca acetoxidans strain DSM 11109
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.