STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB08676.1General secretion pathway protein G; COGs: COG2165 Type II secretory pathway pseudopilin PulG; InterPro IPR012902:IPR013545:IPR010054; KEGG: sfu:Sfum_0102 general secretion pathway protein G; PFAM: Type II secretion system protein G; Prepilin-type cleavage/methylation, N-terminal; SPTR: General secretion pathway protein G; TIGRFAM: General secretion pathway protein G; Prepilin-type cleavage/methylation, N-terminal; IMG reference gene:2504154327; PFAM: Prokaryotic N-terminal methylation motif; Bacterial type II secretion system protein G; TIGRFAM: general secretion pathway protein G; pr [...] (143 aa)    
Predicted Functional Partners:
AEB08680.1
General secretion pathway protein K; COGs: COG3156 Type II secretory pathway component PulK; InterPro IPR005628; KEGG: geo:Geob_0889 general secretion pathway protein K; SPTR: General secretion pathway protein K; IMG reference gene:2504154331; PFAM: General secretion pathway protein K.
 
 
 0.978
AEB08674.1
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.977
AEB08675.1
Type II secretion system F domain protein; COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR018076; KEGG: dat:HRM2_30250 GspF2; PFAM: Type II secretion system F domain; SPTR: General secretion pathway protein F; IMG reference gene:2504154326; PFAM: Bacterial type II secretion system protein F domain.
 
  
 0.975
AEB08679.1
Hypothetical protein; InterPro IPR012902; KEGG: mca:MCA1119 general secretory pathway protein J; SPTR: Prepilin-type N-terminal cleavage/methylation domain protein; IMG reference gene:2504154330.
  
 
 0.908
AEB08684.1
General secretion pathway protein D; COGs: COG1450 Type II secretory pathway component PulD; InterPro IPR005644:IPR004846:IPR013356; KEGG: mca:MCA1123 general secretion pathway protein D; PFAM: Type II/III secretion system; NolW-like; SPTR: General secretion pathway protein D; TIGRFAM: Type II secretion system GspD; IMG reference gene:2504154335; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein; TIGRFAM: general secretion pathway protein D.
  
 0.867
AEB08681.1
Fimbrial assembly family protein; InterPro IPR007813; KEGG: dat:HRM2_30140 GspL; PFAM: Fimbrial assembly; SPTR: GspL; IMG reference gene:2504154332; PFAM: Fimbrial assembly protein (PilN).
 
  
 0.837
AEB08686.1
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.779
AEB08677.1
COGs: COG4970 Tfp pilus assembly protein FimT; InterPro IPR012902; KEGG: vei:Veis_0685 general secretion pathway protein H; SPTR: General secretion pathway protein H; IMG reference gene:2504154328; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
 
  
 0.768
AEB08678.1
InterPro IPR012902; KEGG: nhl:Nhal_0443 general secretion pathway protein H; SPTR: General secretion pathway protein H; IMG reference gene:2504154329.
       0.600
AEB08673.1
COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258; KEGG: mxa:MXAN_4628 transglycosylase SLT domain-containing protein; PFAM: Lytic transglycosylase-like, catalytic; SPTR: Lytic transglycosylase, catalytic; IMG reference gene:2504154324; PFAM: Transglycosylase SLT domain.
       0.506
Your Current Organism:
Desulfobacca acetoxidans
NCBI taxonomy Id: 880072
Other names: D. acetoxidans DSM 11109, Desulfobacca acetoxidans DSM 11109, Desulfobacca acetoxidans str. DSM 11109, Desulfobacca acetoxidans strain DSM 11109
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