STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB08986.1Radical SAM domain protein; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR006158:IPR007197; KEGG: sat:SYN_02176 Fe-S oxidoreductase; PFAM: Radical SAM; Cobalamin (vitamin B12)-binding; SMART: Elongator protein 3/MiaB/NifB; SPTR: Putative uncharacterized protein; IMG reference gene:2504154658; PFAM: Radical SAM superfamily; B12 binding domain. (437 aa)    
Predicted Functional Partners:
AEB08722.1
KEGG: dol:Dole_1913 GTP-binding protein; SPTR: Conserved hypothetical GTP-binding protein; IMG reference gene:2504154375.
  
     0.753
AEB08987.1
KEGG: noc:Noc_0662 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504154659.
       0.723
AEB08988.1
KEGG: mgi:Mflv_2879 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504154660.
       0.723
AEB08985.1
KEGG: mpr:MPER_11193 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504154657.
       0.645
AEB09882.1
4-vinyl reductase 4VR; COGs: COG1719 hydrocarbon binding protein (contains V4R domain); InterPro IPR004096; KEGG: gur:Gura_0328 4-vinyl reductase, 4VR; PFAM: 4-vinyl reductase, 4VR; SPTR: 4-vinyl reductase, 4VR; IMG reference gene:2504155606; PFAM: V4R domain.
  
  
 0.530
AEB10196.1
4-vinyl reductase 4VR; COGs: COG1719 hydrocarbon binding protein (contains V4R domain); InterPro IPR004096; KEGG: dma:DMR_41680 hypothetical protein; PFAM: 4-vinyl reductase, 4VR; SPTR: Putative uncharacterized protein; IMG reference gene:2504155933; PFAM: V4R domain.
  
  
 0.530
Your Current Organism:
Desulfobacca acetoxidans
NCBI taxonomy Id: 880072
Other names: D. acetoxidans DSM 11109, Desulfobacca acetoxidans DSM 11109, Desulfobacca acetoxidans str. DSM 11109, Desulfobacca acetoxidans strain DSM 11109
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.