STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB09074.1KEGG: sfu:Sfum_3406 response regulator receiver protein; SPTR: Response regulator receiver protein; IMG reference gene:2504154749; PFAM: Response regulator receiver domain. (125 aa)    
Predicted Functional Partners:
AEB09073.1
Nitrogen-fixing NifU domain protein; COGs: COG0822 NifU homolog involved in Fe-S cluster formation; InterPro IPR002871; KEGG: dbr:Deba_2174 nitrogen-fixing NifU domain protein; PFAM: NIF system FeS cluster assembly, NifU, N-terminal; SPTR: Nitrogen-fixing NifU domain protein; IMG reference gene:2504154748; PFAM: NifU-like N terminal domain.
  
  
 0.779
AEB09072.1
COGs: COG1433 conserved hypothetical protein; InterPro IPR003731; KEGG: sfu:Sfum_3407 dinitrogenase iron-molybdenum cofactor biosynthesis; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; SPTR: Dinitrogenase iron-molybdenum cofactor biosynthesis; IMG reference gene:2504154747; PFAM: Dinitrogenase iron-molybdenum cofactor.
     
 0.730
AEB07994.1
COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR001610:IPR003018:IPR003661:IPR 003594:IPR001789:IPR008207:IPR013655:IPR013767; KEGG: ava:Ava_1029 multi-sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-3; PAS fold; GAF; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/ph [...]
  
 
 0.589
AEB08148.1
Cobyrinic acid ac-diamide synthase; COGs: COG0455 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: dbr:Deba_2321 cobyrinic acid ac-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: Cobyrinic acid a,c-diamide synthase; IMG reference gene:2504153776; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
  
 
 0.471
AEB10401.1
COGs: COG3852 Signal transduction histidine kinase nitrogen specific; InterProIPR013767:IPR003661:IPR003594:IPR001789:IPR 000014:IPR001610; KEGG: dal:Dalk_3513 PAS/PAC sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; [...]
  
 
 0.429
AEB08314.1
COGs: COG0642 Signal transduction histidine kinase; InterProIPR003018:IPR000014:IPR003661:IPR003594:IPR 001789:IPR013767; KEGG: sfu:Sfum_2401 multi-sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; GAF; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; GAF; PAS; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SPTR: Multi-sensor h [...]
  
 
 0.419
AEB08378.1
COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR000014:IPR001610:IPR003018:IPR003661:IPR 003594:IPR001789:IPR013656:IPR013655; KEGG: sfu:Sfum_3112 putative PAS/PAC sensor protein; PFAM: ATPase-like, ATP-binding domain; PAS fold-3; GAF; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; GAF; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor [...]
  
 
 0.419
AEB08403.1
COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR001789:IPR003661:IPR003594:IPR000014:IPR 013656; KEGG: dal:Dalk_1072 multi-sensor hybrid histidine kinase; PFAM: Signal transduction response regulator, receiver domain; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain [...]
  
 
 0.419
AEB09782.1
Putative PAS/PAC sensor protein; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR000014:IPR003018:IPR013767:IPR003594:IPR 001789; KEGG: dal:Dalk_5108 PAS/PAC sensor hybrid histidine kinase; PFAM: Signal transduction response regulator, receiver domain; GAF; PAS fold; ATPase-like, ATP-binding domain; SMART: Signal transduction response regulator, receiver domain; GAF; PAS; SPTR: ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; TIGRFAM: PAS; IMG reference gene:2504155500; PFAM: Response regulator receiver domain [...]
  
 
 0.419
Your Current Organism:
Desulfobacca acetoxidans
NCBI taxonomy Id: 880072
Other names: D. acetoxidans DSM 11109, Desulfobacca acetoxidans DSM 11109, Desulfobacca acetoxidans str. DSM 11109, Desulfobacca acetoxidans strain DSM 11109
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