STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB09151.1KEGG: nwa:Nwat_2561 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504154832. (66 aa)    
Predicted Functional Partners:
AEB09152.1
Addiction module toxin, RelE/StbE family; InterPro IPR012753:IPR007712; KEGG: syp:SYNPCC7002_A2640 addiction module antitoxin; PFAM: Plasmid stabilisation system; SPTR: Addiction module toxin, RelE/StbE family subfamily; TIGRFAM: Addiction module toxin, RelE/StbE; IMG reference gene:2504154833; PFAM: Plasmid stabilisation system protein; TIGRFAM: addiction module toxin, RelE/StbE family.
       0.779
AEB09149.1
Hypothetical protein; KEGG: gbm:Gbem_3907 hemolysin III family channel protein; SPTR: Magnetosome protein MamN; IMG reference gene:2504154830.
       0.559
AEB09150.1
RNA-directed DNA polymerase (Reverse transcriptase); COGs: COG3344 Retron-type reverse transcriptase; InterPro IPR000477; KEGG: pph:Ppha_2459 CRISPR-associated protein Cas1; PFAM: Reverse transcriptase; SPTR: Putative uncharacterized protein; IMG reference gene:2504154831; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase).
       0.559
cas1-2
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
       0.508
cas2-2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
       0.508
Your Current Organism:
Desulfobacca acetoxidans
NCBI taxonomy Id: 880072
Other names: D. acetoxidans DSM 11109, Desulfobacca acetoxidans DSM 11109, Desulfobacca acetoxidans str. DSM 11109, Desulfobacca acetoxidans strain DSM 11109
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