STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB09604.1Phosphodiesterase, MJ0936 family; COGs: COG0622 phosphoesterase; InterPro IPR004843:IPR000979; KEGG: rca:Rcas_1812 metallophosphoesterase; PFAM: Metallo-dependent phosphatase; SPTR: Metallophosphoesterase; TIGRFAM: Phosphodiesterase MJ0936; IMG reference gene:2504155313; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family. (248 aa)    
Predicted Functional Partners:
AEB09605.1
InterPro IPR000182; KEGG: rrs:RoseRS_4349 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: Putative GCN5-related N-acetyltransferase; IMG reference gene:2504155314; PFAM: Acetyltransferase (GNAT) family.
       0.650
AEB09400.1
Nucleoside-triphosphatase rdgB; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
  
  
 0.644
AEB09603.1
COGs: COG0557 Exoribonuclease R; InterPro IPR001900; KEGG: dol:Dole_0448 exoribonuclease II; PFAM: Ribonuclease II/R; SMART: Ribonuclease II/R; SPTR: Exoribonuclease II; IMG reference gene:2504155312; PFAM: RNB domain; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases.
       0.520
AEB09602.1
CoA-binding domain protein; COGs: COG1042 Acyl-CoA synthetase (NDP forming); InterPro IPR003781; KEGG: sat:SYN_02112 acetyl-CoA synthetase beta subunit; PFAM: CoA-binding; SMART: CoA-binding; SPTR: Acetyl-CoA synthetase beta subunit; IMG reference gene:2504155311; PFAM: CoA binding domain.
       0.471
AEB09601.1
KEGG: dal:Dalk_4351 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504155310.
       0.465
Your Current Organism:
Desulfobacca acetoxidans
NCBI taxonomy Id: 880072
Other names: D. acetoxidans DSM 11109, Desulfobacca acetoxidans DSM 11109, Desulfobacca acetoxidans str. DSM 11109, Desulfobacca acetoxidans strain DSM 11109
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