STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB09961.1KEGG: dbr:Deba_2431 TonB family protein; SPTR: Protein TolA; IMG reference gene:2504155686; PFAM: TolA C-terminal; TIGRFAM: TolA protein; TonB family C-terminal domain. (423 aa)    
Predicted Functional Partners:
AEB09960.1
Protein tolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.927
AEB09962.1
Protein TolR; COGs: COG0848 Biopolymer transport protein; InterPro IPR014168:IPR003400; KEGG: sfu:Sfum_0753 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein ExbD/TolR; TIGRFAM: Biopolymer transport, TolR; IMG reference gene:2504155687; PFAM: Biopolymer transport protein ExbD/TolR; TIGRFAM: TolR protein.
  
 
 0.872
AEB09963.1
Protein TolQ; COGs: COG0811 Biopolymer transport protein; InterPro IPR014163:IPR002898; KEGG: dol:Dole_2213 Tol-Pal system TolQ; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Protein tolQ; TIGRFAM: Tol-Pal system, TolQ; IMG reference gene:2504155688; PFAM: MotA/TolQ/ExbB proton channel family; TIGRFAM: TolQ protein.
 
 
 0.862
AEB08166.1
Glycoside hydrolase family 3 domain protein; COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764; KEGG: dak:DaAHT2_2367 glycoside hydrolase family 3 domain protein; PFAM: Glycoside hydrolase, family 3, N-terminal; SPTR: Putative beta-N-acetylglucosaminidase; IMG reference gene:2504153794; PFAM: Glycosyl hydrolase family 3 N terminal domain.
  
  
 0.651
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
  
  
 0.549
AEB09168.1
Tetratricopeptide TPR_2 repeat-containing protein; InterPro IPR019734:IPR013105:IPR001440; KEGG: tye:THEYE_A2092 tetratricopeptide repeat domain protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: Tetratricopeptide domain protein; IMG reference gene:2504154850.
  
   
 0.494
AEB09964.1
InterPro IPR006683; KEGG: dbr:Deba_1360 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily protein; IMG reference gene:2504155689; PFAM: Thioesterase superfamily.
       0.483
AEB08634.1
Protein of unknown function UPF0153; InterPro IPR005358; KEGG: tye:THEYE_A0135 lipoprotein, putative; PFAM: Uncharacterised protein family UPF0153; SPTR: Lipoprotein, putative; IMG reference gene:2504154284; PFAM: Uncharacterised protein family (UPF0153).
 
     0.466
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.460
AEB10044.1
COGs: COG1729 conserved hypothetical protein; KEGG: gsu:GSU0023 TPR domain protein; SPTR: TPR domain protein; IMG reference gene:2504155770; TIGRFAM: tol-pal system protein YbgF.
 
   0.460
Your Current Organism:
Desulfobacca acetoxidans
NCBI taxonomy Id: 880072
Other names: D. acetoxidans DSM 11109, Desulfobacca acetoxidans DSM 11109, Desulfobacca acetoxidans str. DSM 11109, Desulfobacca acetoxidans strain DSM 11109
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.