STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB10141.1Phage SPO1 DNA polymerase-related protein; COGs: COG1573 Uracil-DNA glycosylase; InterPro IPR005122:IPR005273; KEGG: gur:Gura_2925 phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase-like; SPTR: Phage SPO1 DNA polymerase-related protein; TIGRFAM: Phage SPO1 DNA polymerase-related protein; IMG reference gene:2504155875; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4. (251 aa)    
Predicted Functional Partners:
AEB10140.1
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.
      0.823
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
      0.686
AEB09739.1
COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR011344:IPR000424; KEGG: ppd:Ppro_0449 single-strand binding protein; PFAM: Primosome PriB/single-strand DNA-binding; SPTR: Single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; IMG reference gene:2504155451; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb).
   
   0.683
AEB10142.1
Protein of unknown function DUF107; COGs: COG1030 Membrane-bound serine protease (ClpP class); InterPro IPR002810; KEGG: sfu:Sfum_0465 hypothetical protein; PFAM: Nodulation efficiency, NfeD; SPTR: Nodulation efficiency protein NfeD; IMG reference gene:2504155876; PFAM: NfeD-like.
       0.662
AEB10143.1
Band 7 protein; COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: dbr:Deba_1222 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: Band 7 protein; IMG reference gene:2504155877; PFAM: SPFH domain / Band 7 family.
       0.646
AEB10618.1
COGs: COG5016 Pyruvate/oxaloacetate carboxyltransferase; InterPro IPR000891:IPR003379:IPR000089; KEGG: dly:Dehly_0355 carboxylase-domain containing protein; PFAM: Carboxylase, conserved domain; Pyruvate carboxyltransferase; Biotin/lipoyl attachment; PRIAM: Pyruvate carboxylase; SPTR: Pyruvate carboxylase subunit B; IMG reference gene:2504156380; PFAM: HMGL-like; Biotin-requiring enzyme; Conserved carboxylase domain.
  
    0.586
AEB09106.1
Universal protein YeaZ; COGs: COG1214 Inactive homolog of metal-dependent protease putative molecular chaperone; InterPro IPR022496:IPR000905; KEGG: sfu:Sfum_1786 peptidase M22, glycoprotease; PFAM: Peptidase M22, glycoprotease; SPTR: Peptidase M22, glycoprotease; TIGRFAM: Conserved hypothetical protein CHP03725, YeaZ; IMG reference gene:2504154784; PFAM: Glycoprotease family; TIGRFAM: universal bacterial protein YeaZ.
  
    0.554
AEB10144.1
Rho termination factor domain protein; InterPro IPR011112; KEGG: sfu:Sfum_0463 hypothetical protein; SMART: Rho termination factor, N-terminal; SPTR: Putative uncharacterized protein; IMG reference gene:2504155878.
       0.546
AEB09466.1
COGs: COG5016 Pyruvate/oxaloacetate carboxyltransferase; InterPro IPR000891; KEGG: tau:Tola_1848 pyruvate carboxylase subunit B; PFAM: Pyruvate carboxyltransferase; PRIAM: Oxaloacetate decarboxylase; SPTR: Oxaloacetate decarboxylase alpha subunit; IMG reference gene:2504155160; PFAM: HMGL-like; Conserved carboxylase domain.
  
    0.516
AEB10139.1
Beta-lactamase domain protein; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001279; KEGG: slp:Slip_0770 beta-lactamase-like protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: Beta-lactamase-like protein; IMG reference gene:2504155873; PFAM: Metallo-beta-lactamase superfamily.
       0.510
Your Current Organism:
Desulfobacca acetoxidans
NCBI taxonomy Id: 880072
Other names: D. acetoxidans DSM 11109, Desulfobacca acetoxidans DSM 11109, Desulfobacca acetoxidans str. DSM 11109, Desulfobacca acetoxidans strain DSM 11109
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