STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cabys_109LAO/AO transport system kinase. (319 aa)    
Predicted Functional Partners:
Cabys_107
methylmalonyl-CoA mutase, N-terminal domain.
  
 0.993
Cabys_108
methylmalonyl-CoA mutase, C-terminal domain.
  
 0.993
Cabys_110
methylmalonyl-CoA epimerase.
   
 0.993
APF18632.1
methylmalonyl-CoA mutase.
  
 0.986
APF18633.1
methylmalonyl-CoA mutase, C-terminal domain.
  
 0.953
Cabys_111
acetyl-CoA carboxylase carboxyltransferase subunit beta /acetyl-CoA carboxylase carboxyltransferase subunit alpha /propionyl-CoA carboxylase carboxyltransferase subunit.
 
   
 0.817
Cabys_114
Oxaloacetate decarboxylase, beta subunit.
       0.790
Cabys_113
Biotin-requiring enzyme.
       0.776
Cabys_112
Oxaloacetate decarboxylase, gamma chain.
       0.762
APF20786.1
Iron complex transport system substrate-binding protein.
 
  
 0.418
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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