STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cabys_115Aspartate aminotransferase. (399 aa)    
Predicted Functional Partners:
APF18488.1
Glutamate synthase (NADH) large subunit.
  
 
 0.942
APF18482.1
Argininosuccinate synthase.
  
 0.924
mdh
Mdh malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate.
  
 0.921
Cabys_704
Malate dehydrogenase (NAD); Catalyzes the conversion of lactate to pyruvate.
  
 0.921
APF18844.1
Aspartate ammonia-lyase.
    
 0.920
Cabys_788
Membrane bound protein complex subunit mbxN.
  
 
 0.919
APF19335.1
Aspartate/methionine/tyrosine aminotransferase.
  
  
 
0.918
APF19621.1
Delta-1-pyrroline-5-carboxylate dehydrogenase.
   
 0.918
APF18526.1
Isocitrate dehydrogenase; Belongs to the monomeric-type IDH family.
 
 
 
  0.917
purA
purA Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
  
 0.917
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.