STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF17900.1Heme exporter protein C. (226 aa)    
Predicted Functional Partners:
APF17899.1
Heme exporter protein B.
 
 0.999
APF17902.1
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
 
 0.996
APF17903.1
Cytochrome c-type biogenesis protein CcmF.
 
  
 0.946
APF17898.1
Heme exporter protein A.
 
  
  0.937
APF18969.1
Cytochrome c-type biogenesis protein CcmF.
 
  
 0.841
ccmD
CcmD family protein.
       0.773
nuoC/nuoD
NADH dehydrogenase subunit C /NADH dehydrogenase subunit D; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
  
 0.687
APF19425.1
Uroporphyrinogen III methyltransferase / synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
    0.632
APF18288.1
WD40-like Beta Propeller Repeat.
 
     0.584
APF18450.1
Component of the Tol biopolymer transport system.
 
     0.518
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.