STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exbD-2Biopolymer transport protein ExbD. (139 aa)    
Predicted Functional Partners:
exbB
Biopolymer transport protein ExbB.
 
 
 0.989
APF17987.1
Outer membrane transport energization protein TonB.
 
 
 0.963
APF20352.1
Protein TonB.
 
 
 0.799
exbD
Biopolymer transport protein ExbD.
 
    
0.783
APF20466.1
Protein of unknown function (DUF4837).
  
     0.773
ybbR
YbbR domain-containing protein.
  
     0.742
APF17895.1
Outer membrane receptor protein, mostly Fe transport.
 
  
 0.723
APF17989.1
acyl-CoA thioester hydrolase.
  
  
 0.679
APF20654.1
Biopolymer transport protein ExbB.
 
 
 0.674
APF19357.1
Hypothetical protein.
  
     0.663
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.