STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF18034.1ABC-2 type transport system permease protein. (260 aa)    
Predicted Functional Partners:
APF18033.1
ABC-2 type transport system ATP-binding protein.
 
 0.992
APF18035.1
ABC-type uncharacterized transport system involved in gliding motility, auxiliary component.
  
 0.969
Cabys_490
ABC-2 type transport system ATP-binding protein.
 
 0.884
APF18036.1
Protein of unknown function (DUF4340).
 
     0.869
APF17898.1
Heme exporter protein A.
  
 
 0.847
APF19209.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.847
APF20559.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.847
APF20560.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.847
APF18032.1
Protein of unknown function (DUF4381).
       0.513
APF18037.1
Ca-activated chloride channel family protein.
       0.461
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.