STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF18042.1SH3 domain-containing protein. (256 aa)    
Predicted Functional Partners:
APF18041.1
Oxygen tolerance.
     0.994
APF18038.1
Ca-activated chloride channel family protein.
 
   
 0.911
APF18037.1
Ca-activated chloride channel family protein.
 
   
 0.843
APF18032.1
Protein of unknown function (DUF4381).
 
     0.821
APF18039.1
Tetratricopeptide repeat-containing protein.
 
  
0.805
APF18030.1
Protein of unknown function DUF58.
 
  
 0.803
APF18043.1
Sporulation related domain-containing protein.
       0.773
batC
BatC.
  
   0.758
exbD-2
Biopolymer transport protein ExbD.
  
     0.621
ybbR
YbbR domain-containing protein.
  
    0.590
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.