STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vapCvapC hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (129 aa)    
Predicted Functional Partners:
APF18145.1
Antitoxin of type II TA system, VapB.
       0.773
APF18143.1
Amino acid adenylation domain-containing protein.
       0.701
APF20169.1
Uncharacterized conserved protein, DUF433 family.
 
   
 0.558
APF18146.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
       0.542
APF18142.1
Four helix bundle protein.
       0.516
APF18147.1
Amino acid adenylation domain-containing protein.
       0.477
acyl
Acyl transferase domain-containing protein.
       0.477
APF20446.1
Putative nuclease of the RNAse H fold, HicB family.
  
     0.471
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.