STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF18283.1Anti-sigma B factor antagonist. (113 aa)    
Predicted Functional Partners:
APF20270.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
 0.981
APF18284.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
 
 0.887
Cabys_670
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
     0.765
APF19546.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
     0.760
APF19472.1
Anti-anti-sigma regulatory factor, SpoIIAA.
  
     0.754
Cabys_461
Serine/threonine-protein kinase RsbW.
 
 
 0.750
Cabys_647
sigma-B regulation protein RsbU (phosphoserine phosphatase).
 
 
 0.748
APF18156.1
PAS domain S-box-containing protein.
 
 
 0.741
Cabys_721
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
 0.724
APF19505.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
   0.711
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.