STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF18382.1AmmeMemoRadiSam system protein B. (371 aa)    
Predicted Functional Partners:
sIR2
NAD-dependent protein deacetylase, SIR2 family.
       0.773
APF18379.1
Micrococcal nuclease.
 
     0.506
APF17997.1
Putative RNA-binding protein containing a PIN domain.
  
     0.502
APF18016.1
Formate-dependent nitrite reductase, membrane component NrfD.
  
     0.472
APF18381.1
Hypothetical protein.
       0.470
Cabys_334
Glycine cleavage H-protein.
 
     0.420
Cabys_332
HAMP domain-containing protein.
  
     0.402
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.