STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cabys_173Fumarate hydratase, class I. (289 aa)    
Predicted Functional Partners:
Cabys_172
Fumarate hydratase, class I.
 
 0.999
fumC
fumC fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
  
 
 0.972
APF20819.1
Succinate dehydrogenase subunit A.
  
 
 0.970
APF20820.1
Succinate dehydrogenase / fumarate reductase iron-sulfur subunit.
  
 
 0.956
mdh
Mdh malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate.
  
 
 0.955
APF19062.1
Allosteric NADP-dependent malic enzyme.
  
 
 0.942
Cabys_22
Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.906
APF20818.1
Succinate dehydrogenase subunit C.
    
 0.901
argH
argH argininosuccinate lyase.
    
  0.818
APF18640.1
Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase.
   
 
 0.818
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.