STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF18732.1MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG. (627 aa)    
Predicted Functional Partners:
APF18733.1
SpoIID/LytB domain protein.
 
     0.913
APF18735.1
Glycosyl transferase family 2.
 
     0.861
APF18734.1
Sugar kinase of the NBD/HSP70 family, may containing an N-terminal HTH domain.
     
 0.771
APF19290.1
Xanthan lyase.
  
     0.720
APF18736.1
Uncharacterized conserved protein YbbC, DUF1343 family.
       0.697
Cabys_519
Glycosyl hydrolase-like 10.
  
     0.538
Cabys_102
Dipeptide/tripeptide permease.
  
     0.510
Cabys_445
Protein of unknown function (DUF1460).
  
     0.497
APF18302.1
Response regulator receiver domain-containing protein.
 
     0.457
APF18742.1
Dipeptide/tripeptide permease.
  
     0.441
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.