STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF18848.1Alpha-amylase. (779 aa)    
Predicted Functional Partners:
APF20305.1
Maltodextrin phosphorylase.
 
 0.939
APF19826.1
Glycogen operon protein; Belongs to the glycosyl hydrolase 13 family.
  
 
 0.938
Cabys_35
Glycosidase.
  
  
  0.932
Cabys_646
Alpha-glucosidase.
 
 
 0.928
APF18375.1
Glycosidase.
  
  
  0.921
Cabys_23
Glycosidase.
  
  
  0.919
APF17982.1
Alpha-amylase.
    
 0.913
Cabys_935
Chemotaxis protein histidine kinase CheA.
  
  
 0.711
cheA
CheA signal transduction histidine kinase.
  
  
 0.711
flgB
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
  
 
 0.697
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.