STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF19046.1Ni/Fe-hydrogenase 1 B-type cytochrome subunit. (214 aa)    
Predicted Functional Partners:
APF19047.1
Hydrogenase large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 
 0.998
APF19048.1
Hydrogenase small subunit.
 
 
 0.998
APF19045.1
Hydrogenase maturation protease.
 
  
 0.951
Cabys_262
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
  
 0.918
APF19978.1
Hydrogenase maturation protease.
 
  
 0.846
APF18663.1
F420-non-reducing hydrogenase subunit A.
  
  
 0.661
APF19977.1
Coenzyme F420-reducing hydrogenase, alpha subunit.
  
  
 0.661
APF18615.1
Hydrogenase nickel incorporation protein HypB.
 
   
 0.601
APF19974.1
Sulfhydrogenase beta subunit.
   
  
 0.531
APF18665.1
F420-non-reducing hydrogenase iron-sulfur subunit.
      
 0.524
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.