Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| APF17892.1 | APF18185.1 | Cabys_1143 | Cabys_1436 | RNA polymerase sigma factor for flagellar operon FliA; Belongs to the sigma-70 factor family. | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | 0.898 |
| APF17892.1 | APF18253.1 | Cabys_1143 | Cabys_1504 | RNA polymerase sigma factor for flagellar operon FliA; Belongs to the sigma-70 factor family. | Flagellin N-terminal helical region. | 0.703 |
| APF17892.1 | APF18328.1 | Cabys_1143 | Cabys_1579 | RNA polymerase sigma factor for flagellar operon FliA; Belongs to the sigma-70 factor family. | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.808 |
| APF17892.1 | csrA | Cabys_1143 | Cabys_2402 | RNA polymerase sigma factor for flagellar operon FliA; Belongs to the sigma-70 factor family. | csrA carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.634 |
| APF17892.1 | flgK | Cabys_1143 | Cabys_1503 | RNA polymerase sigma factor for flagellar operon FliA; Belongs to the sigma-70 factor family. | Flagellar hook-associated protein 1 FlgK. | 0.935 |
| APF17892.1 | fliF | Cabys_1143 | Cabys_1469 | RNA polymerase sigma factor for flagellar operon FliA; Belongs to the sigma-70 factor family. | Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. | 0.831 |
| APF17892.1 | motA | Cabys_1143 | Cabys_1479 | RNA polymerase sigma factor for flagellar operon FliA; Belongs to the sigma-70 factor family. | Chemotaxis protein MotA. | 0.921 |
| APF18185.1 | APF17892.1 | Cabys_1436 | Cabys_1143 | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | RNA polymerase sigma factor for flagellar operon FliA; Belongs to the sigma-70 factor family. | 0.898 |
| APF18185.1 | APF18253.1 | Cabys_1436 | Cabys_1504 | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellin N-terminal helical region. | 0.948 |
| APF18185.1 | APF18328.1 | Cabys_1436 | Cabys_1579 | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.959 |
| APF18185.1 | csrA | Cabys_1436 | Cabys_2402 | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | csrA carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.587 |
| APF18185.1 | flgK | Cabys_1436 | Cabys_1503 | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellar hook-associated protein 1 FlgK. | 0.975 |
| APF18185.1 | fliF | Cabys_1436 | Cabys_1469 | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. | 0.970 |
| APF18185.1 | motA | Cabys_1436 | Cabys_1479 | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Chemotaxis protein MotA. | 0.953 |
| APF18253.1 | APF17892.1 | Cabys_1504 | Cabys_1143 | Flagellin N-terminal helical region. | RNA polymerase sigma factor for flagellar operon FliA; Belongs to the sigma-70 factor family. | 0.703 |
| APF18253.1 | APF18185.1 | Cabys_1504 | Cabys_1436 | Flagellin N-terminal helical region. | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | 0.948 |
| APF18253.1 | APF18328.1 | Cabys_1504 | Cabys_1579 | Flagellin N-terminal helical region. | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.758 |
| APF18253.1 | csrA | Cabys_1504 | Cabys_2402 | Flagellin N-terminal helical region. | csrA carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.661 |
| APF18253.1 | flgK | Cabys_1504 | Cabys_1503 | Flagellin N-terminal helical region. | Flagellar hook-associated protein 1 FlgK. | 0.986 |
| APF18253.1 | fliF | Cabys_1504 | Cabys_1469 | Flagellin N-terminal helical region. | Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. | 0.850 |
page 1 of 4