STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF19322.1Pilus retraction ATPase PilT. (343 aa)    
Predicted Functional Partners:
APF19323.1
Type IV pilus secretin (or competence protein) PilQ.
 
   
 0.949
APF19331.1
Type IV pilus assembly protein PilC/MSHA biogenesis protein MshG.
  
 0.893
APF19332.1
Type 4 prepilin peptidase 1 Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.888
APF19325.1
Pilus assembly protein, PilO.
  
  
 0.849
tfp-2
Tfp pilus assembly protein, ATPase PilM.
     
 0.802
APF19330.1
N-terminal methylation site-containing protein.
 
     0.765
APF19324.1
Hypothetical protein.
       0.752
APF19327.1
Hypothetical protein.
       0.697
APF19333.1
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB.
 
  
0.685
APF19321.1
Invasin domain protein.
       0.553
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.