STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF19507.1Histidine kinase-like ATPase domain-containing protein. (140 aa)    
Predicted Functional Partners:
APF19505.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
 0.901
APF19506.1
Anti-anti-sigma factor.
  
 
 0.882
APF19508.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
 0.791
flgB
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
  
    0.761
fliG
Flagellar motor switch protein FliG.
   
    0.731
motA
Chemotaxis protein MotA.
   
    0.731
flgH
Flagellar L-ring protein precursor FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.731
flgK
Flagellar hook-associated protein 1 FlgK.
   
    0.731
APF18156.1
PAS domain S-box-containing protein.
 
 
 0.714
Cabys_649
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.677
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.