STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cabys_286Por secretion system C-terminal sorting domain-containing protein. (795 aa)    
Predicted Functional Partners:
Cabys_287
WD40-like Beta Propeller Repeat.
       0.746
Cabys_288
Por secretion system C-terminal sorting domain-containing protein.
      
0.721
Cabys_266
N-acetylmuramoyl-L-alanine amidase.
     0.533
Cabys_289
ATP-dependent DNA helicase, RecQ-like.
 
     0.508
Cabys_290
Putative Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake.
 
     0.491
Cabys_285
Por secretion system C-terminal sorting domain-containing protein.
 
    
0.470
Cabys_283
Hypothetical protein.
 
     0.452
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.