STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF19839.1HAMP domain-containing protein. (510 aa)    
Predicted Functional Partners:
APF18998.1
Two-component system, cell cycle response regulator/two-component system, unclassified family, sensor histidine kinase and response regulator.
 
 0.961
ompR
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
   0.961
APF17893.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
0.954
APF18811.1
Response regulator receiver domain-containing protein.
   0.952
APF18680.1
Protein of unknown function (DUF4388).
   0.933
APF18678.1
Diguanylate cyclase (GGDEF) domain-containing protein.
   
 0.912
APF19508.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
 
 0.895
APF20040.1
Two component transcriptional regulator, winged helix family.
   0.884
APF18166.1
Two component transcriptional regulator, winged helix family.
   0.852
APF18454.1
Putative two-component system response regulator.
 
   0.847
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.