STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF19843.1Selenocysteine lyase/Cysteine desulfurase. (374 aa)    
Predicted Functional Partners:
nifU
Nitrogen fixation protein NifU.
 
 
 0.973
sufC
Iron-regulated ABC transporter ATPase subunit SufC.
  
  
 0.814
APF19097.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
    
   0.793
sufB
Iron-regulated ABC transporter membrane component SufB.
  
 
 0.776
sufD
Iron-regulated ABC transporter permease protein SufD.
  
 
 0.776
APF19844.1
Cupin domain protein.
       0.524
APF19842.1
Capsular exopolysaccharide family.
  
  
 0.501
Cabys_262
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
  
 0.492
APF18150.1
Amino acid adenylation domain-containing protein.
  
  
 0.442
selD-2
Selenium donor protein/cysteine desulfurase NifS,TIGR03402; Synthesizes selenophosphate from selenide and ATP. Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
   
0.441
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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