STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cabys_32Carbohydrate ABC transporter membrane protein 2, CUT1 family. (281 aa)    
Predicted Functional Partners:
Cabys_30
Extracellular solute-binding protein family 1; Arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein/arabinogalactan oligomer / maltooligosaccharide transport system permease protein.
 
 0.999
Cabys_31
Arabinogalactan oligomer / maltooligosaccharide transport system permease protein.
 0.999
APF19162.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
 0.998
APF18810.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
 0.991
APF17752.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
 0.990
Cabys_35
Glycosidase.
  
 0.842
APF18809.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
   
 0.795
Cabys_34
Sugar-specific transcriptional regulator TrmB.
       0.775
Cabys_33
Enterochelin esterase.
       0.773
APF18594.1
Beta-phosphoglucomutase family hydrolase; Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/beta-phosphoglucomutase family hydrolase.
  
  
 0.771
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.