STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF19999.1Serpin B; Belongs to the serpin family. (419 aa)    
Predicted Functional Partners:
APF20000.1
Serpin B; Belongs to the serpin family.
 
    
0.620
APF20001.1
Hypothetical protein.
       0.539
APF20892.1
Hypothetical protein.
   
  0.539
APF20895.1
Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA).
   
  0.539
APF19997.1
Two component, sigma54 specific, transcriptional regulator, Fis family; Two-component system, NtrC family, response regulator/two-component system, NtrC family, response regulator HydG.
  
    0.452
APF19996.1
Hypothetical protein.
       0.442
APF19998.1
Signal transduction histidine kinase.
       0.442
APF20002.1
Hypothetical protein.
       0.417
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.