STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cabys_402Membrane protease YdiL, CAAX protease family. (272 aa)    
Predicted Functional Partners:
Cabys_404
Chloride channel protein, CIC family.
       0.804
Cabys_403
RNA methyltransferase, TrmH family; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.773
hisS
hisS histidyl-tRNA synthetase.
       0.727
Cabys_407
Hypothetical protein.
 
   
 0.570
APF20705.1
LEA14-like dessication related protein.
  
     0.559
APF19041.1
TPR repeat-containing protein.
  
     0.479
prkC
PEGA domain-containing protein.
     
 0.479
APF19886.1
ABC-2 type transport system permease protein.
  
  
 0.476
APF19887.1
ABC-2 type transport system permease protein.
  
  
 0.476
APF20561.1
ABC-2 type transport system permease protein.
  
  
 0.476
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.