STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF20937.1Glycosidase. (1144 aa)    
Predicted Functional Partners:
glgA-2
glgA glycogen synthase (ADP-glucose); Synthesizes alpha-1,4-glucan chains using ADP-glucose.
 
  
 0.791
glgA
glgA glycogen synthase (ADP-glucose); Synthesizes alpha-1,4-glucan chains using ADP-glucose.
 
  
 0.668
Cabys_394
Amino acid transporter.
   
 0.646
Cabys_492
Amino acid permease.
   
 0.646
APF18530.1
Putative Fe-Mo cluster-binding protein, NifX family.
  
     0.506
APF20936.1
Putative membrane protein.
       0.458
Cabys_479
Heme-binding domain-containing protein.
  
     0.457
Cabys_414
Hypothetical protein.
  
   
 0.442
APF18594.1
Beta-phosphoglucomutase family hydrolase; Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/beta-phosphoglucomutase family hydrolase.
  
  
 0.439
APF17908.1
Nucleotidyltransferase domain-containing protein.
  
  
 0.432
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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