STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cabys_449Tetratricopeptide repeat-containing protein. (621 aa)    
Predicted Functional Partners:
pilF-3
Tfp pilus assembly protein PilF.
 
     0.773
APF20738.1
WD domain-containing protein, G-beta repeat-containing protein.
  
 0.730
dnaK
dnaK molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.707
APF20275.1
Tetratricopeptide repeat-containing protein.
 
     0.702
APF19663.1
Ankyrin repeat-containing protein.
 
 0.698
APF20483.1
TPR repeat-containing protein.
 
     0.680
APF18832.1
Tetratricopeptide repeat-containing protein.
 
 
 0.658
APF20734.1
Tetratricopeptide repeat-containing protein.
 
   
 0.647
alaS
alaS alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.645
htpG
htpG molecular chaperone HtpG; Molecular chaperone. Has ATPase activity.
  
 0.595
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.