Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Cabys_586Por secretion system C-terminal sorting domain-containing protein. (269 aa)    
Predicted Functional Partners:
APF20459.1
Hypothetical protein.
  
 
   0.793
APF19559.1
Hypothetical protein.
  
 
   0.788
APF20125.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.775
APF18288.1
WD40-like Beta Propeller Repeat.
 
  
 0.772
APF17955.1
Hypothetical protein.
  
     0.762
APF18424.1
Hypothetical protein.
  
     0.762
Cabys_835
Hypothetical protein.
  
     0.761
APF18578.1
Uncharacterized protein family (UPF0164).
  
     0.760
APF18715.1
Hypothetical protein.
  
     0.760
Cabys_274
Hypothetical protein.
  
     0.760
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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