STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cabys_623Putative tricarboxylic transport membrane protein. (498 aa)    
Predicted Functional Partners:
Cabys_622
Tripartite-type tricarboxylate transporter, receptor component TctC.
 
  
 0.989
Cabys_624
Hypothetical protein.
 
     0.794
Cabys_625
Inorganic phosphate transporter, PiT family.
 
     0.767
oprO-OprP
Phosphate-selective porin OprO and OprP.
       0.716
Cabys_621
Adenylate cyclase.
       0.685
Cabys_627
Lamin Tail Domain.
       0.669
APF20871.1
Binding-protein-dependent transport system inner membrane component.
  
    0.618
pdxA
pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
 
   
 0.548
APF19742.1
TRAP transporter, DctM subunit.
  
     0.489
Cabys_620
Hypothetical protein.
       0.450
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.