STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fisRegulatory protein, Fis family. (449 aa)    
Predicted Functional Partners:
Cabys_435
His Kinase A (phospho-acceptor) domain-containing protein.
   
  0.909
APF19298.1
RNA polymerase, sigma 54 subunit, RpoN/SigL.
 
   
 0.754
lysA
lysA diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
 0.544
Cabys_743
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
       0.539
APF18761.1
PAS domain S-box-containing protein.
  
 
 0.462
Cabys_935
Chemotaxis protein histidine kinase CheA.
  
 
 0.417
cheA
CheA signal transduction histidine kinase.
  
 
 0.417
APF18191.1
PAS domain S-box-containing protein.
  
 
 0.407
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.