STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cabys_751HDIG domain-containing protein. (409 aa)    
Predicted Functional Partners:
APF19061.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.751
Cabys_373
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.742
APF18403.1
Response regulator receiver modulated diguanylate cyclase.
 
   
 0.714
APF19736.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
   
 0.700
APF17943.1
Diguanylate cyclase, GGDEF domain.
 
 
 0.698
Cabys_720
Diguanylate cyclase (GGDEF) domain-containing protein.
 
   
 0.470
Cabys_752
Transposase DDE domain-containing protein.
       0.412
APF17818.1
PAS domain S-box-containing protein.
  
     0.403
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.